Gard O Sundby Thomassen

Underdirektør - Seksjon for IT i forskning
Bilde av Gard O Sundby Thomassen
English version of this page
Telefon +47-22840934
Mobiltelefon +47-93674926
Rom 2302
Brukernavn
Besøksadresse Gaustadalleen 23a Kristen Nygaards hus 0373 OSLO
Postadresse Postboks 1059 Blindern 0316 OSLO

Arbeidsområder:

  • Prosjektleder for Tjenester Sensitive Data (TSD); et system som skal tilby lagring av, og muligheter for beregninger på, sensitive forskningsdata.

Bakgrunn:

  • High Throughput Sequencing / Next Generation Sequencing CCB, UIO/OUS
  • Microarray design og analyse, CMBN og CCB, UIO/OUS
  • PhD Bioinformatikk, CMBN OUS/ UIO
  • Gründerskolen
  • Cand Scient Informatikk, UIO
  • Befalsskolen for Kavaleriet, Oppklaringslinjen

Publikasjoner

  • Lorenz, Susanne; Barøy, Tale; Sun, Jinchang; Nome, Torfinn; Vodak, Daniel; Bryne, Jan Christian; Håkelien, Anne-Mari; Fernandez-Cuesta, Lynnette; Möhlendick, B; Rieder, H; Szuhai, K; Zaikova, Olga; Ahlquist, Terje Cruickshank; Thomassen, Gard O Sundby; Skotheim, Rolf Inge; Lothe, Ragnhild A; Tarpey, P; Campbell, P.; Flanagan, A; Myklebost, Ola & Meza, Leonardo Zepeda (2016). Unscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrations. OncoTarget.  ISSN 1949-2553.  7(5), s 5273- 5288 . doi: 10.18632/oncotarget.6567
  • Booth, James A.; Thomassen, Gard O Sundby; Rowe, Alexander D.; Weel-Sneve, Ragnhild; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn & Lindvall, Jessica Margareta (2013). Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response. Scientific Reports.  ISSN 2045-2322.  3 . doi: 10.1038/srep03053 Fulltekst i vitenarkiv
  • Løvf, Marthe; Thomassen, Gard O Sundby; Mertens, Fredrik; Cerveira, Nuno; Teixeira, Manuel; Lothe, Ragnhild A & Skotheim, Rolf Inge (2013). Assessment of Fusion Gene Status in Sarcomas Using a Custom Made Fusion Gene Microarray. PLoS ONE.  ISSN 1932-6203.  8(8) . doi: 10.1371/journal.pone.0070649
  • Nome, Torfinn; Thomassen, Gard O Sundby; Bruun, Jarle; Ahlquist, Terje Cruickshank; Bakken, Anne Cathrine; Hoff, Andreas Midbøe; Rognum, Torleiv Ole; Nesbakken, Arild; Lorenz, Susanne; Sun, Jinchang; Barros-Silva, João D.; Lind, Guro Elisabeth; Myklebost, Ola; Teixeira, Manuel; Meza-Zepeda, Leonardo Andrés; Lothe, Ragnhild A & Skotheim, Rolf Inge (2013). Common fusion transcripts identified in colorectal cancer cell lines by high throughput RNA sequencing . Translational Oncology.  ISSN 1936-5233.  6(5), s 546- 553 . doi: 10.1593/tlo.13457 Fulltekst i vitenarkiv
  • Celestino, Ricardo; Sigstad, Eva; Løvf, Marthe; Thomassen, Gard O Sundby; Kotanska-Grøholt, Krystyna; Jørgensen, Lars Hilmar; Berner, Aasmund; Castro, Patrícia; Lothe, Ragnhild A; Bjøro, Trine; Sobrinho-Simões, Manuel; Soares, Paula & Skotheim, Rolf Inge (2012). Survey of 548 oncogenic fusion transcripts in thyroid tumors supports the importance of the already established thyroid fusions genes. Genes, Chromosomes and Cancer.  ISSN 1045-2257.  51(12), s 1154- 1164 . doi: 10.1002/gcc.22003
  • Løvf, Marthe; Thomassen, Gard O Sundby; Bakken, Anne Cathrine; Celestino, Ricardo; Fioretos, Thoas; Lind, Guro Elisabeth; Lothe, Ragnhild A & Skotheim, Rolf Inge (2011). Fusion Gene Microarray Reveals Cancer Type-Specificity Among Fusion Genes. Genes, Chromosomes and Cancer.  ISSN 1045-2257.  50(5), s 348- 357 . doi: 10.1002/gcc.20860
  • Thomassen, Gard O Sundby; Sneve, Ragnhild; Rowe, Alexander D.; Booth, James; Lindvall, Jessica M.; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar & Rognes, Torbjørn (2010). Tiling Array Analysis of UV Treated Escherichia coli Predicts Novel Differentially Expressed Small Peptides. PLoS ONE.  ISSN 1932-6203.  5(12) . doi: 10.1371/journal.pone.0015356
  • Skotheim, Rolf Inge; Thomassen, Gard O Sundby; Eken, Marthe; Lind, Guro Elisabeth; Micci, Francesca; Ribeiro, FR; Cerveira, N; Teixeira, MR; Heim, Sverre; Rognes, Torbjørn & Lothe, Ragnhild A (2009). A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis . Molecular Cancer.  ISSN 1476-4598.  8 . doi: 10.1186/1476-4598-8-5
  • Thomassen, Gard O Sundby; Rowe, Alexander D.; Lagesen, Karin; Lindvall, Jessica Margareta & Rognes, Torbjørn (2009). Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays . PLoS ONE.  ISSN 1932-6203.  4(6)
  • Thomassen, Gard O. S.; Rosok, Oystein & Rognes, Torbjørn (2006). Computational prediction of microRNAs encoded in viral and other genomes. Journal of Biomedicine and Biotechnology.  ISSN 1110-7243.

Se alle arbeider i Cristin

  • Eide, Hans A; Fotland, Margaret Louise; Kvale, Live Håndlykken; Stangeland, Elin; Stølen, Svein; Thomassen, Gard O Sundby & du Toit, Leon Charl (2015). Sharing and Storing Research Data A 4-level model of the Data flow.
  • Nakken, Sigve; Vodák, Daniel; Fournous, Ghislain; Thomassen, Gard O Sundby & Hovig, Johannes Eivind (2013). Big challenges in personalized cancer medicine . META.  ISSN 1890-2987.  (2), s 8- 12
  • Eike, Morten Christoph; Lærum, Hallvard; Hughes, Timothy; Bremer, Sara; Bergan, Stein; Thomassen, Gard O Sundby; Aanestad, Margunn; Grünfeld, Thomas & Undlien, Dag Erik (2012). A national platform for clinical genetic analysis of high-throughput sequencing data in Norway .
  • Eike, Morten Christoph; Lærum, Hallvard; Hughes, Timothy; Håndstad, Tony; Bremer, Sara; Bergan, Stein; Thomassen, Gard O Sundby; Aanestad, Margunn; Grünfeld, Thomas & Undlien, Dag Erik (2012). GenAP: a platform for clinical genetic analysis of high-throughput sequencing data.
  • Skotheim, Rolf Inge; Nome, Torfinn; Thomassen, Gard O Sundby; Johannessen, Bjarne; Bakken, Anne Cathrine; Bruun, Jarle; Ahlquist, Terje Cruickshank; Meza-Zepeda, L. A.; Myklebost, Ola & Lothe, Ragnhild A (2012). Identification of Fusion Transcripts in Colorectal Cancer by Combined RNA-seq and Exon Microarray Analyses. European Journal of Cancer.  ISSN 0959-8049.  48, s S121- S121
  • Løvf, Marthe; Thomassen, Gard O Sundby; Lind, Guro Elisabeth; Lothe, Ragnhild A & Skotheim, Rolf Inge (2010). An oligo microarray design for detection of known and putative oncogenic fusion transcripts. European Journal of Cancer.  ISSN 0959-8049.  8(5), s 199- 199
  • Thomassen, Gard O Sundby & Rognes, Torbjørn (2010). Design, analysis and applications of custom high-density oligonucleotide microarrays.
  • Skotheim, Rolf Inge; Eken, Marthe; Thomassen, Gard O Sundby; Lind, Guro Elisabeth & Lothe, Ragnhild A (2009). A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. European Journal of Cancer.  ISSN 0959-8049.  7(2), s 147- 148

Se alle arbeider i Cristin

Publisert 20. des. 2012 11:20 - Sist endret 12. juli 2016 10:46