Gard O Sundby Thomassen
Underdirektør
-
IT i forskning

English version of this page
E-post
g.o.s.thomassen@usit.uio.no
Telefon
+47 22840934
Mobiltelefon
+47 93674926
Rom
2302
Brukernavn
Besøksadresse
Gaustadalléen 23 A
Kristen Nygaards hus
0373 OSLO
Postadresse
Postboks 1059 Blindern
0316 OSLO
Arbeidsoppgaver:
- Underdirektør for Avdeling for IT i Forskning ved USIT, UiO
- Leder av sekretariatet for de strategiske koordineringsgruppene for IT ved UiO
- Deltager i sekretariatet for Forskningsinfrastrukturutvalget
- Deltaker fra UiO i Fagråd og Tjenesteråd for Forskning hos UNIT
- Ansvarlig for USITs leveranser for TSD, Uninett Sigma2 AS, CERN NDGF-Tier-1, MusemsIT, Instrumentnett, Fairdata@UiO, Forskerplattformen med mer.
Diverse:
- Forfatter i OECD international expert group report on "Building digital workforce capacity and skills for data-intensive science"
- Podcast done in the BigMed project "IT Infrastructure Needed for Precision Medicine in Norway", 2750 + downloads
- Prosjektleder for Tjenester Sensitive Data (TSD) (2012-2015); et system som skal tilby lagring av, og muligheter for beregninger på, sensitive forskningsdata.
- Video om Forskningsdata FAIR@UiO desember 2020, CiO forum Computerworld Norge (vist under)
Bakgrunn:
- FitSM Foundations, 2020
- Etterutdanning på Inst for Informatikk, UiO, i IT-ledelse, IT-arkitektur, IT-governance og ledelse av komplese IT-systemer (ITLED; 4010,4021,4260,4280)
- ITIL Foundations, 2013
- High Throughput Sequencing / Next Generation Sequencing CCB, UIO/OUS
- Microarray design og analyse, CMBN og CCB, UIO/OUS
- PhD Bioinformatikk, CMBN OUS/ UIO
- Gründerskolen
- Cand Scient Informatikk, UIO
- Befalsskolen for Kavaleriet, Oppklaringslinjen
Publikasjoner
- Aarestrup, FM; Albeyatti, A; Armitage, W; Auffray, C; Augello, L; Balling, Rudi; Benhabiles, N; Bertolini, Guido; Bjaalie, Jan G.; Black, Merja; Blomberg, N.; Bogaert, P; Bubak, M; Claerhout, B; Clarke, Leon; De Meulder, B; D'Errico, G; Di Meglio, A; Forgo, N; Gans-Combe, C; Gray, AE; Gut, I; Gyllenberg, Alexandra; Hemmrich-Stanisak, G; Hjorth, L; Ioannidis, Yannis; Jarmalaite, S; Kel, A; Kherif, F; Korbel, Jan O.; Larue, C; Laszlo, Marton; Maas, Andrew; Magalhaes, Livia; Manneh-Vangramberen, I; Morley-Fletcher, E; Ohmann, Christian; Oksvold, P; Oxtoby, NP; Perseil, Isabelle; Pezoulas, V; Riess, O; Riper, Heleen; Roca, J; Rosenstiel, P; Sabatier, Pierre; Sanz, F.; Tayeb, M; Thomassen, Gard O Sundby; Van Bussel, J; Van den Bulcke, Marc & Van Oyen, Herman (2020). Towards a European health research and innovation cloud (HRIC).. Genome Medicine. ISSN 1756-994X. 12(18) . doi: 10.1186/s13073-020-0713-z Fulltekst i vitenarkiv. Vis sammendrag
- Lorenz, Susanne; Barøy, Tale; Sun, Jinchang; Nome, Torfinn; Vodak, Daniel; Bryne, Jan Christian; Håkelien, Anne-Mari; Fernandez-Cuesta, Lynnette; Möhlendick, B; Rieder, H; Szuhai, K; Zaikova, Olga; Ahlquist, Terje Cruickshank; Thomassen, Gard O Sundby; Skotheim, Rolf Inge; Lothe, Ragnhild A; Tarpey, P; Campbell, P.; Flanagan, A; Myklebost, Ola & Meza, Leonardo Zepeda (2016). Unscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrations. OncoTarget. ISSN 1949-2553. 7(5), s 5273- 5288 . doi: 10.18632/oncotarget.6567 Vis sammendrag
- Booth, James A.; Thomassen, Gard O Sundby; Rowe, Alexander D.; Weel-Sneve, Ragnhild; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn & Lindvall, Jessica Margareta (2013). Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response. Scientific Reports. ISSN 2045-2322. 3 . doi: 10.1038/srep03053 Fulltekst i vitenarkiv.
- Løvf, Marthe; Thomassen, Gard O Sundby; Mertens, Fredrik; Cerveira, Nuno; Teixeira, Manuel; Lothe, Ragnhild A & Skotheim, Rolf Inge (2013). Assessment of Fusion Gene Status in Sarcomas Using a Custom Made Fusion Gene Microarray. PLOS ONE. ISSN 1932-6203. 8(8) . doi: 10.1371/journal.pone.0070649
- Nome, Torfinn; Thomassen, Gard O Sundby; Bruun, Jarle; Ahlquist, Terje Cruickshank; Bakken, Anne Cathrine; Hoff, Andreas Midbøe; Rognum, Torleiv Ole; Nesbakken, Arild; Lorenz, Susanne; Sun, Jinchang; Barros-Silva, João D.; Lind, Guro Elisabeth; Myklebost, Ola; Teixeira, Manuel; Meza-Zepeda, Leonardo Andrés; Lothe, Ragnhild A & Skotheim, Rolf Inge (2013). Common fusion transcripts identified in colorectal cancer cell lines by high throughput RNA sequencing. Translational Oncology. ISSN 1944-7124. 6(5), s 546- 553 . doi: 10.1593/tlo.13457 Fulltekst i vitenarkiv.
- Celestino, Ricardo; Sigstad, Eva; Løvf, Marthe; Thomassen, Gard O Sundby; Kotanska-Grøholt, Krystyna; Jørgensen, Lars Hilmar; Berner, Aasmund; Castro, Patrícia; Lothe, Ragnhild A; Bjøro, Trine; Sobrinho-Simões, Manuel; Soares, Paula & Skotheim, Rolf Inge (2012). Survey of 548 oncogenic fusion transcripts in thyroid tumors supports the importance of the already established thyroid fusions genes. Genes, Chromosomes and Cancer. ISSN 1045-2257. 51(12), s 1154- 1164 . doi: 10.1002/gcc.22003
- Løvf, Marthe; Thomassen, Gard O Sundby; Bakken, Anne Cathrine; Celestino, Ricardo; Fioretos, Thoas; Lind, Guro Elisabeth; Lothe, Ragnhild A & Skotheim, Rolf Inge (2011). Fusion Gene Microarray Reveals Cancer Type-Specificity Among Fusion Genes. Genes, Chromosomes and Cancer. ISSN 1045-2257. 50(5), s 348- 357 . doi: 10.1002/gcc.20860
- Thomassen, Gard O Sundby; Sneve, Ragnhild; Rowe, Alexander D.; Booth, James; Lindvall, Jessica M.; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar & Rognes, Torbjørn (2010). Tiling Array Analysis of UV Treated Escherichia coli Predicts Novel Differentially Expressed Small Peptides. PLOS ONE. ISSN 1932-6203. 5(12) . doi: 10.1371/journal.pone.0015356 Fulltekst i vitenarkiv. Vis sammendrag
- Skotheim, Rolf Inge; Thomassen, Gard O Sundby; Eken, Marthe; Lind, Guro Elisabeth; Micci, Francesca; Ribeiro, FR; Cerveira, N; Teixeira, MR; Heim, Sverre; Rognes, Torbjørn & Lothe, Ragnhild A (2009). A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Molecular Cancer. ISSN 1476-4598. 8 . doi: 10.1186/1476-4598-8-5 Fulltekst i vitenarkiv.
- Thomassen, Gard O Sundby; Rowe, Alexander D.; Lagesen, Karin; Lindvall, Jessica Margareta & Rognes, Torbjørn (2009). Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays. PLOS ONE. ISSN 1932-6203. 4(6) Fulltekst i vitenarkiv.
- Thomassen, Gard O. S.; Rosok, Oystein & Rognes, Torbjørn (2006). Computational prediction of microRNAs encoded in viral and other genomes. Journal of Biomedicine and Biotechnology. ISSN 1110-7243. Fulltekst i vitenarkiv.
- Stangeland, Elin; Soligard, Lars; Thomassen, Gard O Sundby; Bianchini, Federico & Bösl, Korbinian (2020). Data Management Planning workshop for Life Science Projects.
- Stansberg, Christine; Willassen, Nils P; Thomassen, Gard O Sundby; Hovig, Johannes Eivind & Jonassen, Inge (2020). How open databases turn out to be crucial in the fight against Covid-19. NBS-nytt. ISSN 0801-3535. 4, s 38- 43
- Øvrelid, Egil; Bygstad, Bendik & Thomassen, Gard O Sundby (2020). TSD: A GENERATIVE RESEARCH PLATFORM IN THE AGE OF THE PANDEMICS.
- Øvrelid, Egil; Bygstad, Bendik & Thomassen, Gard O Sundby (2020). Tsd: A Research Platform For Sensitive Data.
- Eide, Hans A; Fotland, Margaret Louise; Kvale, Live Håndlykken; Stangeland, Elin; Stølen, Svein; Thomassen, Gard O Sundby & du Toit, Leon Charl (2015). Sharing and Storing Research Data A 4-level model of the Data flow.
- Nakken, Sigve; Vodák, Daniel; Fournous, Ghislain; Thomassen, Gard O Sundby & Hovig, Johannes Eivind (2013). Big challenges in personalized cancer medicine. META. ISSN 1890-1956. (2), s 8- 12 Vis sammendrag
- Eike, Morten Christoph; Lærum, Hallvard; Hughes, Timothy; Bremer, Sara; Bergan, Stein; Thomassen, Gard O Sundby; Aanestad, Margunn; Grünfeld, Thomas & Undlien, Dag Erik (2012). A national platform for clinical genetic analysis of high-throughput sequencing data in Norway. Vis sammendrag
- Eike, Morten Christoph; Lærum, Hallvard; Hughes, Timothy; Håndstad, Tony; Bremer, Sara; Bergan, Stein; Thomassen, Gard O Sundby; Aanestad, Margunn; Grünfeld, Thomas & Undlien, Dag Erik (2012). GenAP: a platform for clinical genetic analysis of high-throughput sequencing data. Vis sammendrag
- Skotheim, Rolf Inge; Nome, Torfinn; Thomassen, Gard O Sundby; Johannessen, Bjarne; Bakken, Anne Cathrine; Bruun, Jarle; Ahlquist, Terje Cruickshank; Meza-Zepeda, L. A.; Myklebost, Ola & Lothe, Ragnhild A (2012). Identification of Fusion Transcripts in Colorectal Cancer by Combined RNA-seq and Exon Microarray Analyses. European Journal of Cancer. ISSN 0959-8049. 48, s S121- S121
- Løvf, Marthe; Thomassen, Gard O Sundby; Lind, Guro Elisabeth; Lothe, Ragnhild A & Skotheim, Rolf Inge (2010). An oligo microarray design for detection of known and putative oncogenic fusion transcripts. European Journal of Cancer. ISSN 0959-8049. 8(5), s 199- 199
- Thomassen, Gard O Sundby & Rognes, Torbjørn (2010). Design, analysis and applications of custom high-density oligonucleotide microarrays. Series of dissertations submitted to the Faculty of Medicine, University of Oslo. 965.
- Skotheim, Rolf Inge; Eken, Marthe; Thomassen, Gard O Sundby; Lind, Guro Elisabeth & Lothe, Ragnhild A (2009). A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. European Journal of Cancer. ISSN 0959-8049. 7(2), s 147- 148
Publisert 20. des. 2012 11:20
- Sist endret 4. feb. 2021 13:26